Grim SL, Voorhies AA, Biddanda BA, Jain S, Nold SC, Green R, et al. Omics-Inferred Partitioning and Expression of Diverse Biogeochemical Functions in a Low-O2 Cyanobacterial Mat Community. mSystems. 2021 Dec 21;6(6):e0104221.
Haria, D., Ravichandar, J., Yamamoto, L., Chow, C.E., Raja, B., Dreux, J., Graham, K., Iverson, K., Iwai, S., Jain, S. and Katlinskaya, Y., 2019, November. "Leveraging the Second Genome platform to develop microbiome-derived cancer immunotherapies." In JOURNAL FOR IMMUNOTHERAPY OF CANCER (Vol. 7): BMC.
Katlinskaya, Y.V., Haria, D., McLaughlin, L., Jain, S., Iwai, S., DeSantis, T., Weinmaier, T., Takeuchi, T., Hoey, A., Dabbagh, K. and Graham, K.,. "A novel intestinal microbiome-derived peptide modulates host T cell activation.", Cancer Res July 1 2019 (79) (13 Supplement) 576; DOI: 10.1158/1538-7445.AM2019-576
Haria, D., Kiefel, H., Katlinskaya, Y., Jain, S., Weinmaier, T., Iwai, S., DeSantis, T., Takeuchi, T., Dabbagh, K. and Graham, K.,. "Novel microbiome-derived peptides activate the host innate immune system by regulation of TLR signaling.", Cancer Res July 1 2019 (79) (13 Supplement) 1490; DOI: 10.1158/1538-7445.AM2019-1490
Kiefel, H., Haria, D., Katlinskaya, Y., Ravichandar, D., McLaughlin, L., Jain, S., Weinmaier, T., Iwai, S., DeSantis, T., Takeuchi, T. and Dabbagh, K., "A novel intestinal microbiome-derived peptide modulates immune cell activity and the tumor microenvironment." Cancer Res July 1 2019 (79) (13 Supplement) 4963; DOI: 10.1158/1538-7445.AM2019-4963
Smith DJ, Ravichandar JD, Jain S, Griffin DW, Yu H, Tan Q, Thissen J, Lusby T, Nicoll P, Shedler S, Martinez P, Osorio A, Lechniak J, Choi S, Sabino K, Iverson K, Chan L, Jaing C and McGrath J "Airborne Bacteria in Earth's Lower Stratosphere Resemble Taxa Detected in the Troposphere: Results From a New NASA Aircraft Bioaerosol Collector (ABC)." Frontiers in Microbiology. 9:1752. doi: 10.3389/fmicb.2018.01752
Stadler, L.B., Delgado Vela, J., Jain, S., Dick, G.J., Love, N.G. "Elucidating the impact of microbial community biodiversity on pharmaceutical biotransformation during wastewater treatment." Microbial Biotechnology. doi: 10.1111/1751-7915.12870.
Berry, M.A., White, J.D., Davis, T.W., Jain, S., Johengen, T.H., Dick, G.J., Sarnelle, O., Denef, V.J. "Are Oligotypes Meaningful Ecological and Phylogenetic Units? A Case Study of Microcystis in Freshwater Lakes." Frontiers in Microbiology. doi: 10.3389/fmicb.2017.00365.
Li, M., Jain, S., Dick, G.J. "Genomic and Transcriptomic Resolution of Organic Matter Utilization Among Deep-Sea Bacteria in Guaymas Basin Hydrothermal Plumes." Frontiers in Microbiology. doi:10.3389/fmicb.2016.01125.
Den Uyl, P. A., Richardson, L. L., Jain, S., and G. J. Dick "Unraveling the physiological roles of the cyanobacterium Geitlerinema sp. BBD and other black band disease community members through genomic analysis of a mixed culture." Plos One. doi: 10.1371/journal.pone.0157953.
Flood, B.E., Fliss, P., Jones, D.S., Dick, G., Jain, S., Kaster, A.K., Winkel, M. Muβmann, M., Bailey, J.V., "Single-Cell (Meta-)Genomics of a Dimorphic Candidatus Thiomargarita nelsonii Reveals Genomic Plasticity." Frontiers in Extreme Microbiology. doi: 10.3389/fmicb.2016.00603.
Li, M., B. J. Baker, K. Anantharaman, S. Jain, J. Breier, and G. J. Dick "Genomic and Transcriptomic Evidence for Scavenging of Diverse Organic Compounds by Widespread Deep-Sea Archaea", Nature Communications. doi: 10.1038/ncomms9933.
Schofield, M. M.*,Jain, S.*, D. Porat, G. J. Dick and D. H. Sherman. “Identification and analysis of the bacterial endosymbiont specialized for production of the chemotherapeutic natural product ET-743.” Environmental Microbiology. doi: 10.1111/1462-2920.12908.
Jain, S. and G. J. Dick. “SuperMoM: A graph database to store and analyze microbial community omics and environmental data.” NSF conference Global Solutions to Regional Problems: Harmful Algal Blooms 2015.
Vorobev, A, S. Jagadevan, S. Jain, K. Anantharaman, G. J. Dick, S Vuilleumier, and J Semrau. "Genomic and transcriptomic analyses of the facultative methanotroph Methylocystis sp. strain SB2 grown on methane or ethanol", Applied and Environmental Microbiology. doi: 10.1128/AEM.00218-14.
Li, M., S. Jain, B.J. Baker, C.A. Taylor and G.J. Dick. "Novel hydrocarbon monooxygenase genes in the metatranscriptome of a natural deep-sea hydrocarbon plume." Environmental Microbiology. doi: 10.1111/1462-2920.12182.
Sheik, C, S. Jain and G. J. Dick. "Metabolic flexibility of deep-sea Sar324 revealed through metagenomic and transcriptomic analysis." Environmental Microbiology. doi: 10.1111/1462-2920.12165.
Baker, B.J., C. S. Sheik, C. A. Taylor, S. Jain, A. Bhasi, J.D. Cavalcoli and G.J. Dick. "Community transcriptomic assembly reveals microbes that contribute to deep-sea carbon and nitrogen cycling.", The ISME Journal, doi: 10.1038/ismej.2013.85.
Lesniewski, R.A., S. Jain, P.D. Schloss, K. Anantharaman,and G.J. Dick. “The metatranscriptome of a deep-sea hydrothermal plume is dominated by water column methanotrophs and lithotrophs.”, The ISME Journal, doi:10.1038/ismej.2012.63.
Voorhies, A.A., B.A. Biddanda, S.T. Kendall, S. Jain, D.N. Marcus, S.C. Nold, N.D. Sheldon, and G.J. Dick. "Cyanobacterial life at low O2: Community genomics and function reveal metabolic versatility and extremely low diversity of a cyanobacterial mat". Geobiology 10: 250-267.